Data Science & ML MCP Servers

MCP servers for data science, machine-learning workflows, notebooks, model training and inference. Each entry is scanned with the deterministic Capability-Flow Trust Model — grades are computed, never self-reported.

Webcake Storefront npm
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webcake-storefront-mcp

MCP server for the WebCake/StoreCake storefront builder — page CRUD, page authoring, products, orders, and more

Data Science & ML Score 93/100 4 findings 112/wk Cap. High
Rason npm
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@frontlinesystems/rason-mcp-server

Build, solve, and analyze RASON optimization, simulation, data science, and decision models

Data Science & ML Score 93/100 1 finding 108/wk Cap. High
Subagent Source verified npm
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@heretyc/subagent-mcp

MCP server that launches Claude Code/Codex sub-agents and routes tasks to Claude Messages or OpenAI-compatible API providers.

Data Science & ML Score 93/100 11 findings 105/wk Cap. High
Viberaven npm
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@viberaven/mcp

MCP server for VibeRaven production-readiness: check_readiness, verify, heal, audit, and strict gate tools for Cursor, Claude Code, and Codex.

Data Science & ML Score 93/100 3 findings 100/wk Cap. High
Tunnel Source verified npm
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tunnel-mcp

Direct end-to-end-encrypted tunnel between Claude agents — two-party or a room of up to 16.

Data Science & ML Score 93/100 4 findings 91/wk Cap. High
Import Guardian npm
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import-guardian-mcp

Catch AI-hallucinated (slopsquatted) npm imports in generated code BEFORE npm install. Scans a code block, flags imports of packages that don't exist on npm (the name an LLM invented and attackers register with malware) plus fresh lookalike squats. MCP se

Data Science & ML Score 93/100 1 finding 80/wk Cap. High
Fluorite npm
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fluorite-mcp

Enterprise-grade MCP server for Claude Code CLI with 6,200+ spike templates, 86 library specs, intelligent memory engine, and continuous learning capabilities.

Data Science & ML Score 93/100 8 findings 52/wk Cap. High
Spacedata npm
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spacedata

Aggregated public space data (satellite orbits, catalogs, launches) as an AI-friendly CLI

Data Science & ML Score 93/100 2 findings 37/wk Cap. High
Enhanced Pubmed npm
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enhanced-pubmed-mcp-server

Enhanced PubMed Search MCP Server - Pure Node.js implementation with no Python dependencies

Data Science & ML Score 93/100 1 finding 31/wk Cap. High
Nds npm
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nds-mcp

Nuclear Data Services MCP server — offline SQLite-backed nuclear physics data queries

Data Science & ML Score 93/100 10 findings 28/wk Cap. High
Alphagenome npm
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@jolab/alphagenome-mcp

MCP server integrating Google DeepMind's AlphaGenome for AI-powered genomic variant analysis with Claude Desktop

Data Science & ML Score 93/100 1 finding 25/wk Cap. High
Wildlife Insights npm
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wildlife-insights-mcp

Model Context Protocol (MCP) server for Wildlife Insights GraphQL API with natural language tools for wildlife management and species identification

Data Science & ML Score 93/100 1 finding 25/wk Cap. High
Medikode npm
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@medikode/mcp-server

Model Context Protocol (MCP) server for Medikode healthcare SaaS platform

Data Science & ML Score 93/100 1 finding 23/wk Cap. High
Deepnote npm
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@deepnote/mcp

MCP server for AI-assisted Deepnote notebook creation and manipulation

Data Science & ML Score 93/100 2 findings 21/wk Cap. High
Magpie Search npm
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magpie-search-mcp

npx launcher for magpie-search — a federated search engine for AI agents (transcripts, files, knowledge graph, vector, web in one call), trust-ranked and token-budgeted, exposed as an MCP server. Runs the Python package via uv.

Data Science & ML Score 93/100 1 finding 17/wk Cap. High
Peptoma npm
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peptoma-mcp

Official PEPTOMA MCP server — connect any AI agent to the PEPTOMA open DeSci peptide research platform

Data Science & ML Score 93/100 1 finding 16/wk Cap. High
Urlmcp npm
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urlmcp

Self-contained MCP server that turns any website into a runnable MCP server, in-process. Host-as-brain by default (no API key); optional OpenAI/Anthropic/Gemini/Groq/Ollama/... or a custom inference URL.

Data Science & ML Score 93/100 3 findings 14/wk Cap. High
Voice npm
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voice-mcp-server

An MCP server to allow LLMs to speak and listen via bidirectional voice loops

Data Science & ML Score 93/100 8 findings 14/wk Cap. High
Wavescope npm
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wavescope-mcp

Wavelet-based multi-resolution context management for MCP

Data Science & ML Score 93/100 1 finding 13/wk Cap. High
1xn Vmcp PyPI
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1xn-vmcp

v(irtual)MCP - Extend, Compose, Customize MCP servers

Data Science & ML Score 93/100 4 findings Cap. High
Agentman PyPI
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agentman-mcp

A tool for building and managing AI agents

Data Science & ML Score 93/100 2 findings Cap. High
Alibabacloud Mcp Proxy PyPI
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alibabacloud-mcp-proxy

Local stdio MCP proxy for Alibaba Cloud OpenAPI MCP servers.

Data Science & ML Score 93/100 2 findings Cap. High
Arize Phoenix PyPI
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arize-phoenix

AI Observability and Evaluation

Data Science & ML Score 93/100 4 findings Cap. High
Autonomath PyPI
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autonomath-mcp

REST + MCP context-compression layer for Japanese institutional public data. jpcite turns long PDFs, official pages, and search results into compact Evidence Packets with source URLs, fetched timestamps, known gaps, and compatibility/exclusion rules before downstream AI agents draft answers. 3 yen/billable unit metered (3.30 tax-incl), anonymous 3/day per IP free.

Data Science & ML Score 93/100 3 findings Cap. High