AI, Memory & Reasoning MCP Servers

MCP servers that give assistants persistent memory, knowledge graphs and structured reasoning. Each entry is scanned with the deterministic Capability-Flow Trust Model — grades are computed, never self-reported.

Tmcp Session Manager Source verified npm
A
@tmcp/session-manager

Session management for TMCP (TypeScript Model Context Protocol) transport implementations. This package provides the base classes and in-memory implementations for both streaming session coordination and session metadata persistence.

AI, Memory & Reasoning Score 100/100 0 findings 2.4M/wk Cap. Minimal
Sequential Thinking (official) Official 3 implementations
A
best: @modelcontextprotocol/server-sequential-thinking

The official structured-reasoning server: break problems into revisable thought sequences.

AI, Memory & Reasoning Best score 100/100 1 finding 103k/wk Cap. Minimal
Memory (official) Official 33 implementations
A
best: @modelcontextprotocol/server-memory

The official knowledge-graph memory server: persistent entities, relations and observations.

AI, Memory & Reasoning Best score 100/100 0 findings 74k/wk Cap. Minimal
Apps Official npm
A
@n8n/mcp-apps

MCP Apps UI resources and server helpers for n8n

AI, Memory & Reasoning Score 100/100 0 findings 39k/wk Cap. Minimal
Agent402 Source verified npm
A
agent402-mcp

Open-source MCP server exposing Agent402.Tools' catalog — 500+ strong: 400+ self-hostable tools + 100 multi-tool skill packs (security-audit, trend-analysis, structured-scrape, decode-blob, forecasting-bake-off) for AI agents — browser, web search & answe

AI, Memory & Reasoning Score 100/100 0 findings 878/wk Cap. Minimal
Ollama Source verified npm
A
ollama-mcp-server

Modern MCP server for Ollama – rebooted and actively maintained.

AI, Memory & Reasoning Score 100/100 0 findings 488/wk Cap. Minimal
Bookstack Source verified 2 implementations
A
best: bookstack-mcp-server

MCP server providing comprehensive access to BookStack knowledge management system

AI, Memory & Reasoning Best score 100/100 0 findings 413/wk Cap. Minimal
Megamemory Source verified npm
A
megamemory

MCP server that gives coding agents persistent project understanding via a knowledge graph

AI, Memory & Reasoning Score 100/100 1 finding 340/wk Cap. Minimal
Markdown Vault Source verified npm
A
@wirux/mcp-markdown-vault

Headless semantic MCP server for Obsidian, Logseq, Dendron and any markdown-based knowledge base

AI, Memory & Reasoning Score 100/100 0 findings 323/wk Cap. Minimal
Neurodivergent Memory Source verified npm
A
neurodivergent-memory

A Model Context Protocol server for knowledge graphs designed around neurodivergent thinking patterns

AI, Memory & Reasoning Score 100/100 0 findings 294/wk Cap. Minimal
Neo4j Knowledge Graph Source verified npm
A
@henrychong-ai/mcp-neo4j-knowledge-graph

Neo4j-based knowledge graph with temporal versioning and semantic search.

AI, Memory & Reasoning Score 100/100 0 findings 288/wk Cap. Minimal
Littlebigbrain Source verified npm
A
@littlebigbrain/mcp

MCP server for little big brain — graph and hybrid search tools for agents

AI, Memory & Reasoning Score 100/100 0 findings 259/wk Cap. Minimal
Xmind Source verified npm
A
@41px/mcp-xmind

MCP server for XMind

AI, Memory & Reasoning Score 100/100 0 findings 240/wk Cap. Minimal
Foundryvtt Source verified npm
A
foundryvtt-mcp

Model Context Protocol server for FoundryVTT integration

AI, Memory & Reasoning Score 100/100 0 findings 239/wk Cap. Minimal
Notes Source verified 2 implementations
A
best: @abhishekmcp/notes

MCP server for local markdown notes — ranked search, tags, todos, and a wiki-link knowledge graph, from any MCP client.

AI, Memory & Reasoning Best score 100/100 0 findings 230/wk Cap. Minimal
Site Source verified npm
A
@bounded-systems/site-mcp

Read-only MCP server over robertdelanghe.dev's signed static API. A thin implementation of @bounded-systems/static-mcp: the site's verbs + resource catalog + config, served as a Sigstore-verified static-response MCP server over stdio.

AI, Memory & Reasoning Score 100/100 0 findings 229/wk Cap. Minimal
Mushi Mushi Source verified npm
A
@mushi-mushi/mcp

MCP server for Mushi Mushi — triage user-felt bugs, pull evidence (screenshots, console logs, network requests), check blast radius, and dispatch fix PRs, all from your AI coding agent

AI, Memory & Reasoning Score 100/100 0 findings 192/wk Cap. Minimal
Memory Keeper Source verified 2 implementations
A
best: mcp-memory-keeper

Persistent context management for AI coding assistants so context survives across sessions.

AI, Memory & Reasoning Best score 100/100 5 findings 181/wk Cap. Minimal
Scrapbox Cosense Source verified npm
A
scrapbox-cosense-mcp

MCP server for cosense

AI, Memory & Reasoning Score 100/100 0 findings 157/wk Cap. Minimal
Serpdive Source verified npm
A
serpdive-mcp

MCP server for SERPdive, the AI Search API: real-time web search returning answer-ready page content for LLMs and agents. Same speed as Tavily, 20.2% fewer tokens, 60.7% of decided quality duels on a public benchmark.

AI, Memory & Reasoning Score 100/100 0 findings 117/wk Cap. Minimal
Agentsmd Memory Source verified npm
A
agentsmd-memory

Zero-dependency MCP server that gives AI agents a self-updating project memory in AGENTS.md. Returns merge instructions instead of mutating state, so every change is a reviewable diff.

AI, Memory & Reasoning Score 100/100 0 findings 105/wk Cap. Minimal
Siyuan Source verified npm
A
siyuan-mcp

Safe, structured Model Context Protocol server for SiYuan Note

AI, Memory & Reasoning Score 100/100 0 findings 105/wk Cap. Minimal
Builderforce Memory Source verified npm
A
@seanhogg/builderforce-memory-mcp

BuilderForce Agent Memory — MCP transport. Exposes @seanhogg/builderforce-memory to any MCP client (Claude Agent SDK in-process, stdio, or HTTP) over a pluggable MemoryBackend, with token-saving fetch-on-demand recall.

AI, Memory & Reasoning Score 100/100 4 findings 94/wk Cap. Minimal
Slimcontext Source verified npm
A
slimcontext-mcp-server

MCP Server for SlimContext - AI chat history compression tools

AI, Memory & Reasoning Score 100/100 0 findings 91/wk Cap. Minimal

What are AI memory and reasoning MCP servers?

Servers in this category extend an AI assistant with state that outlives a single chat. Instead of forgetting everything when the session ends, the assistant writes to and reads from an external store through the Model Context Protocol. Typical backends include vector databases such as Chroma or Qdrant, graph stores like Neo4j, embedded SQLite, plain JSON or Markdown files on disk, and hosted memory layers such as Mem0 or Zep. A second group adds no storage at all: structured-reasoning servers give the model a scratchpad for step-by-step thinking, branching and revision. The full MCP Trust Registry lets you compare them side by side.

How assistants actually use knowledge graph and memory servers

  • Carry context across sessions — remember a codebase's conventions, past decisions and user preferences, and recall them days later.
  • Build a queryable knowledge graph — store people, projects and their relations as entities, then answer questions like "what did the team decide about the payment flow?"
  • Reason in the open — decompose a hard problem into numbered thought steps, revisit earlier steps and revise the conclusion before answering.

Memory pairs naturally with servers from the Databases and Productivity & Workflow categories, where the recalled context drives real queries and actions.

Why persistent memory changes the security picture

A memory store is a write path into every future conversation. If a malicious or compromised MCP server — or untrusted content the assistant summarizes into memory — plants a poisoned entry, that entry is replayed as trusted context indefinitely: persistent prompt injection. Memory files also accumulate exactly what attackers want, from internal plans to credentials mentioned in passing, and a server that combines memory with broad file or network access could quietly exfiltrate that entire history.

That is why each listing here carries a Trust Score: a deterministic engine reads the published npm or PyPI package, maps its capability blast radius and reports individual findings with evidence. The A-F grade is reproducible, involves no AI judgment and cannot be bought — the scoring model is documented in full.

Is it safe to give an AI assistant persistent memory?

It can be, when the memory MCP server has a narrow blast radius — local storage, no unnecessary network egress — and a strong Trust Score. Prefer servers whose stored data you can inspect and wipe. Treat everything written into memory as future prompt input, because that is exactly what it becomes.