Plant Genomics — the complete, unedited output of the deterministic mcptrustchecker engine v1.12.1, scanned . Every finding, capability tag and score component below is exactly what the engine produced — no AI, no post-processing.
{
"tool": {
"name": "mcptrustchecker",
"version": "1.12.1",
"methodologyVersion": "mcptrustchecker-1.12"
},
"target": {
"id": "plant-genomics-mcp",
"source": {
"kind": "package",
"origin": "plant-genomics-mcp"
},
"server": {
"name": "plant-genomics-mcp"
}
},
"grade": "A",
"score": {
"score": 99,
"threatScore": 100,
"grade": "A",
"band": "A",
"categorySubtotals": {
"injection": 0,
"exfiltration": 0,
"permissions": 0,
"supply-chain": 0,
"network": 0,
"hygiene": 0
},
"vector": [
{
"kind": "client",
"term": "capability-exposure",
"level": "minimal",
"label": "capability blast radius (minimal) — client exposure if the model is manipulated",
"appliedPenalty": 0
},
{
"kind": "client",
"term": "verification-discount",
"level": "repo",
"label": "publisher verification (public source) — no provenance, but the source is public and inspectable",
"appliedPenalty": 1
},
{
"kind": "client",
"term": "coverage-honesty",
"level": "source",
"label": "inspection depth (source) — how much of the target the scan could see",
"appliedPenalty": 0
}
],
"gatesFired": [],
"methodologyVersion": "mcptrustchecker-1.12"
},
"capability": {
"level": "minimal",
"reasons": [],
"tags": []
},
"coverage": {
"level": "source",
"inputs": {
"toolSurface": true,
"implementationSource": true,
"packageMetadata": true,
"liveTransport": false
},
"caveats": [
"Tools were statically extracted from the published source (50 recovered), not enumerated from a running server. Tool-poisoning, Unicode-smuggling, capability and toxic-flow analysis ran on this inferred surface, but a mis-parsed registration could be missed or mis-attributed, so tool-derived findings are capped below “confirmed”. To grade the real runtime surface, scan the running server: --command \"npx -y <package>\"."
]
},
"findings": [],
"toxicFlows": [],
"capabilities": [
{
"tool": "ensembl_plants_lookup_locus",
"tags": [],
"reasons": {}
},
{
"tool": "get_gene_xrefs",
"tags": [],
"reasons": {}
},
{
"tool": "get_sequence",
"tags": [],
"reasons": {}
},
{
"tool": "ensembl_region_query",
"tags": [],
"reasons": {}
},
{
"tool": "phytozome_lookup_locus",
"tags": [],
"reasons": {}
},
{
"tool": "resolve_locus_to_uniprot",
"tags": [],
"reasons": {}
},
{
"tool": "locus_literature",
"tags": [],
"reasons": {}
},
{
"tool": "locus_go_annotations",
"tags": [],
"reasons": {}
},
{
"tool": "locus_plant_ontology",
"tags": [],
"reasons": {}
},
{
"tool": "go_enrichment",
"tags": [],
"reasons": {}
},
{
"tool": "gramene_homologs",
"tags": [],
"reasons": {}
},
{
"tool": "kegg_pathways",
"tags": [],
"reasons": {}
},
{
"tool": "bar_gene_summary",
"tags": [],
"reasons": {}
},
{
"tool": "bar_efp_expression",
"tags": [],
"reasons": {}
},
{
"tool": "bar_aiv_interactions",
"tags": [],
"reasons": {}
},
{
"tool": "string_interactions",
"tags": [],
"reasons": {}
},
{
"tool": "tair_locus_info",
"tags": [],
"reasons": {}
},
{
"tool": "plantcyc_locus_info",
"tags": [],
"reasons": {}
},
{
"tool": "alphafold_structure",
"tags": [],
"reasons": {}
},
{
"tool": "experimental_structures",
"tags": [],
"reasons": {}
},
{
"tool": "tf_binding_motifs",
"tags": [],
"reasons": {}
},
{
"tool": "jaspar_motif",
"tags": [],
"reasons": {}
},
{
"tool": "experimental_interactions",
"tags": [],
"reasons": {}
},
{
"tool": "locus_gene_rifs",
"tags": [],
"reasons": {}
},
{
"tool": "interpro_domains",
"tags": [],
"reasons": {}
},
{
"tool": "locus_variants",
"tags": [],
"reasons": {}
},
{
"tool": "vep_annotate",
"tags": [],
"reasons": {}
},
{
"tool": "panther_family",
"tags": [],
"reasons": {}
},
{
"tool": "orthodb_orthologs",
"tags": [],
"reasons": {}
},
{
"tool": "aragwas_associations",
"tags": [],
"reasons": {}
},
{
"tool": "arabidopsis_natural_variation",
"tags": [],
"reasons": {}
},
{
"tool": "batch_ensembl_plants_lookup_locus",
"tags": [],
"reasons": {}
},
{
"tool": "batch_get_gene_xrefs",
"tags": [],
"reasons": {}
},
{
"tool": "batch_phytozome_lookup_locus",
"tags": [],
"reasons": {}
},
{
"tool": "batch_resolve_locus_to_uniprot",
"tags": [],
"reasons": {}
},
{
"tool": "batch_locus_literature",
"tags": [],
"reasons": {}
},
{
"tool": "blast_sequence",
"tags": [],
"reasons": {}
},
{
"tool": "batch_locus_go_annotations",
"tags": [],
"reasons": {}
},
{
"tool": "batch_gramene_homologs",
"tags": [],
"reasons": {}
},
{
"tool": "batch_kegg_pathways",
"tags": [],
"reasons": {}
},
{
"tool": "batch_bar_gene_summary",
"tags": [],
"reasons": {}
},
{
"tool": "batch_bar_aiv_interactions",
"tags": [],
"reasons": {}
},
{
"tool": "batch_string_interactions",
"tags": [],
"reasons": {}
},
{
"tool": "atted_coexpression",
"tags": [],
"reasons": {}
},
{
"tool": "batch_atted_coexpression",
"tags": [],
"reasons": {}
},
{
"tool": "analyze_locus_synth",
"tags": [],
"reasons": {}
},
{
"tool": "find_homologs_synth",
"tags": [],
"reasons": {}
},
{
"tool": "biological_context_synth",
"tags": [],
"reasons": {}
},
{
"tool": "consensus_homologs",
"tags": [],
"reasons": {}
},
{
"tool": "gene_report",
"tags": [],
"reasons": {}
}
],
"surfaceDigest": "291c126e07fd643f70cee0bc31c056f511aafadfe7c762a2763a3b1cdaa6509b",
"stats": {
"tools": 50,
"prompts": 0,
"resources": 0,
"findingsBySeverity": {
"critical": 0,
"high": 0,
"medium": 0,
"low": 0,
"info": 0
}
}
}