Plant Genomics MCP Server
plant-genomics-mcp
PyPI
v1.20.0
Published by musharna — no publish provenance, so origin is unverified, but the source is public: the repository link below is self-declared yet readable, so you can inspect the code before adopting it.
Plant genomics MCP — 50 tools across 23 live backends (Ensembl Plants, Phytozome, UniProt, Europe PMC, QuickGO, Planteome, PlantCyc/PMN, g:Profiler, AlphaFold, PDBe, InterPro, JASPAR, ThaleMine, PANTHER, OrthoDB, AraGWAS, 1001 Genomes, BLAST, Gramene, KEGG, STRING, ATTED-II, BAR) for Claude Code
The grade answers one question — how safe is this server for you to adopt — so it is computed in two auditable stages. Nothing below is an opinion or an LLM's guess; every line is a real term the deterministic engine applied, and the same input always yields the same number.
1. Threat score — 100 − 0 = 100. What the published surface and source actually contain:
The deterministic scan raised no scored threat in the surface it inspected — the threat score stayed at 100. Capability observations and advisory notes are recorded but never lower it.
2. Client adoption risk — 100 − 1 = 99. Three small, subtract-only factors that reflect your risk in adopting it — a clean scan proves less on a powerful, unverified or barely-inspectable package, so the grade says so plainly:
| Points | Adoption-risk factor |
|---|---|
| −1 | publisher verification (public source) — no provenance, but the source is public and inspectable |
Capability observations and info notes are shown under Findings but never scored.
Open any row's finding below for the file, line and evidence behind a deduction.
Findings 0
Tools 50
Each tool and what it can reach — statically extracted from the published source.
alphafold_structureno sensitive capabilityanalyze_locus_synthno sensitive capabilityarabidopsis_natural_variationno sensitive capabilityaragwas_associationsno sensitive capabilityatted_coexpressionno sensitive capabilitybar_aiv_interactionsno sensitive capabilitybar_efp_expressionno sensitive capabilitybar_gene_summaryno sensitive capabilitybatch_atted_coexpressionno sensitive capabilitybatch_bar_aiv_interactionsno sensitive capability
Show 40 more tools ↓
batch_bar_gene_summaryno sensitive capabilitybatch_ensembl_plants_lookup_locusno sensitive capabilitybatch_get_gene_xrefsno sensitive capabilitybatch_gramene_homologsno sensitive capabilitybatch_kegg_pathwaysno sensitive capabilitybatch_locus_go_annotationsno sensitive capabilitybatch_locus_literatureno sensitive capabilitybatch_phytozome_lookup_locusno sensitive capabilitybatch_resolve_locus_to_uniprotno sensitive capabilitybatch_string_interactionsno sensitive capabilitybiological_context_synthno sensitive capabilityblast_sequenceno sensitive capabilityconsensus_homologsno sensitive capabilityensembl_plants_lookup_locusno sensitive capabilityensembl_region_queryno sensitive capabilityexperimental_interactionsno sensitive capabilityexperimental_structuresno sensitive capabilityfind_homologs_synthno sensitive capabilitygene_reportno sensitive capabilityget_gene_xrefsno sensitive capabilityget_sequenceno sensitive capabilitygo_enrichmentno sensitive capabilitygramene_homologsno sensitive capabilityinterpro_domainsno sensitive capabilityjaspar_motifno sensitive capabilitykegg_pathwaysno sensitive capabilitylocus_gene_rifsno sensitive capabilitylocus_go_annotationsno sensitive capabilitylocus_literatureno sensitive capabilitylocus_plant_ontologyno sensitive capabilitylocus_variantsno sensitive capabilityorthodb_orthologsno sensitive capabilitypanther_familyno sensitive capabilityphytozome_lookup_locusno sensitive capabilityplantcyc_locus_infono sensitive capabilityresolve_locus_to_uniprotno sensitive capabilitystring_interactionsno sensitive capabilitytair_locus_infono sensitive capabilitytf_binding_motifsno sensitive capabilityvep_annotateno sensitive capability
What this scan could not see
- Tools were statically extracted from the published source (50 recovered), not enumerated from a running server. Tool-poisoning, Unicode-smuggling, capability and toxic-flow analysis ran on this inferred surface, but a mis-parsed registration could be missed or mis-attributed, so tool-derived findings are capped below “confirmed”. To grade the real runtime surface, scan the running server: --command "npx -y <package>".
Versions 7
Scan history per published version. The engine is deterministic — the same version always yields the same score, so a changed score means the package itself changed.
| Version | Score | Findings | Engine | Scanned |
|---|---|---|---|---|
v1.20.0 latest |
A 99/100 | 0 | 1.12.1 | 2026-07-29 |
v1.19.4 |
A 99/100 | 0 | 1.12.1 | 2026-07-28 |
v1.19.2 |
A 99/100 | 0 | 1.12.1 | 2026-07-27 |
v1.19.0 |
A 99/100 | 0 | 1.10.0 | 2026-07-25 |
v1.18.2 |
A 99/100 | 0 | 1.9.0 | 2026-07-24 |
Show 2 more versions ↓
v1.18.1 |
A 99/100 | 0 | 1.9.0 | 2026-07-24 |
v1.18.0 |
A 99/100 | 0 | 1.9.0 | 2026-07-23 |
Embed this score
Show this server's live Trust Score in your README, docs or website. The badge is served straight from the registry and updates automatically after every rescan — no API key needed. It links back to this page, so anyone who sees the grade can also read the findings behind it instead of taking a number on faith.
Verify this score yourself
The score above is reproducible: the same package version always yields the same result. Run it locally or over the free API — no account, no LLM, fully deterministic.
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