Gwas — the complete, unedited output of the deterministic mcptrustchecker engine v1.13.0, scanned . Every finding, capability tag and score component below is exactly what the engine produced — no AI, no post-processing.
{
"tool": {
"name": "mcptrustchecker",
"version": "1.13.0",
"methodologyVersion": "mcptrustchecker-1.13"
},
"target": {
"id": "gwas-mcp",
"source": {
"kind": "package",
"origin": "gwas-mcp"
},
"server": {
"name": "gwas-mcp"
}
},
"grade": "A",
"score": {
"score": 96,
"threatScore": 100,
"grade": "A",
"band": "A",
"categorySubtotals": {
"injection": 0,
"exfiltration": 0,
"permissions": 0,
"supply-chain": 0,
"network": 0,
"hygiene": 0
},
"vector": [
{
"kind": "client",
"term": "capability-exposure",
"level": "moderate",
"label": "capability blast radius (moderate) — client exposure if the model is manipulated",
"appliedPenalty": 3
},
{
"kind": "client",
"term": "verification-discount",
"level": "repo",
"label": "publisher verification (public source) — no provenance, but the source is public and inspectable",
"appliedPenalty": 1
},
{
"kind": "client",
"term": "coverage-honesty",
"level": "source",
"label": "inspection depth (source) — how much of the target the scan could see",
"appliedPenalty": 0
}
],
"gatesFired": [],
"methodologyVersion": "mcptrustchecker-1.13"
},
"capability": {
"level": "moderate",
"reasons": [
"ingests untrusted external content (a prompt-injection entry point)"
],
"tags": [
"untrusted-input"
]
},
"coverage": {
"level": "source",
"inputs": {
"toolSurface": true,
"implementationSource": true,
"packageMetadata": true,
"liveTransport": false
},
"caveats": [
"Tools were statically extracted from the published source (44 recovered), not enumerated from a running server. Tool-poisoning, Unicode-smuggling, capability and toxic-flow analysis ran on this inferred surface, but a mis-parsed registration could be missed or mis-attributed, so tool-derived findings are capped below “confirmed”. To grade the real runtime surface, scan the running server: --command \"npx -y <package>\"."
]
},
"findings": [],
"toxicFlows": [],
"capabilities": [
{
"tool": "get_alphafold_structure",
"tags": [
"untrusted-input"
],
"reasons": {
"untrusted-input": [
"keyword \"download\""
]
}
},
{
"tool": "search_alphafold",
"tags": [],
"reasons": {}
},
{
"tool": "get_drug_targets",
"tags": [],
"reasons": {}
},
{
"tool": "get_disease_associations",
"tags": [],
"reasons": {}
},
{
"tool": "search_open_targets",
"tags": [],
"reasons": {}
},
{
"tool": "search_omim",
"tags": [],
"reasons": {}
},
{
"tool": "get_gene_diseases",
"tags": [],
"reasons": {}
},
{
"tool": "run_gwas",
"tags": [],
"reasons": {}
},
{
"tool": "calculate_genomic_inflation",
"tags": [],
"reasons": {}
},
{
"tool": "identify_significant_snps",
"tags": [],
"reasons": {}
},
{
"tool": "calculate_heritability_ldsc",
"tags": [],
"reasons": {}
},
{
"tool": "annotate_snps",
"tags": [],
"reasons": {}
},
{
"tool": "query_gwas_catalog",
"tags": [],
"reasons": {}
},
{
"tool": "get_eqtl_data",
"tags": [],
"reasons": {}
},
{
"tool": "gene_set_enrichment",
"tags": [],
"reasons": {}
},
{
"tool": "search_clinvar",
"tags": [],
"reasons": {}
},
{
"tool": "get_clinvar_variant",
"tags": [],
"reasons": {}
},
{
"tool": "get_protein_interactions",
"tags": [],
"reasons": {}
},
{
"tool": "get_interaction_network",
"tags": [],
"reasons": {}
},
{
"tool": "get_functional_enrichment",
"tags": [],
"reasons": {}
},
{
"tool": "calculate_prs",
"tags": [],
"reasons": {}
},
{
"tool": "clump_snps",
"tags": [],
"reasons": {}
},
{
"tool": "extract_locus",
"tags": [],
"reasons": {}
},
{
"tool": "search_uniprot",
"tags": [],
"reasons": {}
},
{
"tool": "get_protein_details",
"tags": [],
"reasons": {}
},
{
"tool": "search_ncbi_gene",
"tags": [],
"reasons": {}
},
{
"tool": "get_interpro_domains",
"tags": [],
"reasons": {}
},
{
"tool": "search_ensembl_gene",
"tags": [],
"reasons": {}
},
{
"tool": "get_variant_info",
"tags": [],
"reasons": {}
},
{
"tool": "vcf_quality_check",
"tags": [],
"reasons": {}
},
{
"tool": "calculate_pca",
"tags": [],
"reasons": {}
},
{
"tool": "ld_pruning",
"tags": [],
"reasons": {}
},
{
"tool": "calculate_missingness",
"tags": [],
"reasons": {}
},
{
"tool": "search_pdb_structures",
"tags": [],
"reasons": {}
},
{
"tool": "get_pdb_structure",
"tags": [],
"reasons": {}
},
{
"tool": "search_kegg_pathway",
"tags": [],
"reasons": {}
},
{
"tool": "get_kegg_pathway",
"tags": [],
"reasons": {}
},
{
"tool": "get_gene_pathways",
"tags": [],
"reasons": {}
},
{
"tool": "search_pharmgkb",
"tags": [],
"reasons": {}
},
{
"tool": "get_drug_gene_interactions",
"tags": [],
"reasons": {}
},
{
"tool": "create_manhattan_plot",
"tags": [],
"reasons": {}
},
{
"tool": "create_qq_plot",
"tags": [],
"reasons": {}
},
{
"tool": "create_regional_plot",
"tags": [],
"reasons": {}
},
{
"tool": "create_pca_plot",
"tags": [],
"reasons": {}
}
],
"surfaceDigest": "7f43d85f48641462f5c2341023ee41e858448650d5ccd177235f3a9e9f98d647",
"stats": {
"tools": 44,
"prompts": 0,
"resources": 0,
"findingsBySeverity": {
"critical": 0,
"high": 0,
"medium": 0,
"low": 0,
"info": 0
}
}
}