Gwas MCP Server
gwas-mcp
PyPI
v1.0.2
Published by zaeyasa — no publish provenance, so origin is unverified, but the source is public: the repository link below is self-declared yet readable, so you can inspect the code before adopting it.
A powerful MCP Server for GWAS and Bioinformatics Research - Access 30+ tools from 14 major biological databases
The grade answers one question — how safe is this server for you to adopt — so it is computed in two auditable stages. Nothing below is an opinion or an LLM's guess; every line is a real term the deterministic engine applied, and the same input always yields the same number.
1. Threat score — 100 − 0 = 100. What the published surface and source actually contain:
The deterministic scan raised no scored threat in the surface it inspected — the threat score stayed at 100. Capability observations and advisory notes are recorded but never lower it.
2. Client adoption risk — 100 − 4 = 96. Three small, subtract-only factors that reflect your risk in adopting it — a clean scan proves less on a powerful, unverified or barely-inspectable package, so the grade says so plainly:
| Points | Adoption-risk factor |
|---|---|
| −3 | capability blast radius (moderate) — client exposure if the model is manipulated |
| −1 | publisher verification (public source) — no provenance, but the source is public and inspectable |
Capability observations and info notes are shown under Findings but never scored.
Open any row's finding below for the file, line and evidence behind a deduction.
Findings 0
Tools 44
Each tool and what it can reach — statically extracted from the published source.
get_alphafold_structureingests untrusted inputannotate_snpsno sensitive capabilitycalculate_genomic_inflationno sensitive capabilitycalculate_heritability_ldscno sensitive capabilitycalculate_missingnessno sensitive capabilitycalculate_pcano sensitive capabilitycalculate_prsno sensitive capabilityclump_snpsno sensitive capabilitycreate_manhattan_plotno sensitive capabilitycreate_pca_plotno sensitive capability
Show 34 more tools ↓
create_qq_plotno sensitive capabilitycreate_regional_plotno sensitive capabilityextract_locusno sensitive capabilitygene_set_enrichmentno sensitive capabilityget_clinvar_variantno sensitive capabilityget_disease_associationsno sensitive capabilityget_drug_gene_interactionsno sensitive capabilityget_drug_targetsno sensitive capabilityget_eqtl_datano sensitive capabilityget_functional_enrichmentno sensitive capabilityget_gene_diseasesno sensitive capabilityget_gene_pathwaysno sensitive capabilityget_interaction_networkno sensitive capabilityget_interpro_domainsno sensitive capabilityget_kegg_pathwayno sensitive capabilityget_pdb_structureno sensitive capabilityget_protein_detailsno sensitive capabilityget_protein_interactionsno sensitive capabilityget_variant_infono sensitive capabilityidentify_significant_snpsno sensitive capabilityld_pruningno sensitive capabilityquery_gwas_catalogno sensitive capabilityrun_gwasno sensitive capabilitysearch_alphafoldno sensitive capabilitysearch_clinvarno sensitive capabilitysearch_ensembl_geneno sensitive capabilitysearch_kegg_pathwayno sensitive capabilitysearch_ncbi_geneno sensitive capabilitysearch_omimno sensitive capabilitysearch_open_targetsno sensitive capabilitysearch_pdb_structuresno sensitive capabilitysearch_pharmgkbno sensitive capabilitysearch_uniprotno sensitive capabilityvcf_quality_checkno sensitive capability
What this scan could not see
- Tools were statically extracted from the published source (44 recovered), not enumerated from a running server. Tool-poisoning, Unicode-smuggling, capability and toxic-flow analysis ran on this inferred surface, but a mis-parsed registration could be missed or mis-attributed, so tool-derived findings are capped below “confirmed”. To grade the real runtime surface, scan the running server: --command "npx -y <package>".
Versions 1
Scan history per published version. The engine is deterministic — the same version always yields the same score, so a changed score means the package itself changed.
| Version | Score | Findings | Engine | Scanned |
|---|---|---|---|---|
v1.0.2 latest |
A 96/100 | 0 | 1.13.0 | 2026-08-25 |
Embed this score
Show this server's live Trust Score in your README, docs or website. The badge is served straight from the registry and updates automatically after every rescan — no API key needed. It links back to this page, so anyone who sees the grade can also read the findings behind it instead of taking a number on faith.
Verify this score yourself
The score above is reproducible: the same package version always yields the same result. Run it locally or over the free API — no account, no LLM, fully deterministic.
npx mcptrustchecker scan gwas-mcp --online --registry pypiMore in Learning & Documentation
stdio compatibility bridge for the hosted AgentMail MCP server
MCP server for Alfa documentation retrieval
MCP server providing Alpine.js documentation and reference
Search the official Astro framework documentation.
MCP server providing ATAG 2.0 (Authoring Tool Accessibility Guidelines) guidance for authoring tool developers
Aurais Research Reader as an MCP server — paste a paper or article, get a structured read with verbatim-verified quotes + a signed Vorion proof chain (via @vorionsys/aurais-core).