Bach Biotools — the complete, unedited output of the deterministic mcptrustchecker engine v1.13.0, scanned . Every finding, capability tag and score component below is exactly what the engine produced — no AI, no post-processing.
{
"tool": {
"name": "mcptrustchecker",
"version": "1.13.0",
"methodologyVersion": "mcptrustchecker-1.13"
},
"target": {
"id": "bach-biotools-server",
"source": {
"kind": "package",
"origin": "bach-biotools-server"
},
"server": {
"name": "bach-biotools-server"
}
},
"grade": "A",
"score": {
"score": 99,
"threatScore": 100,
"grade": "A",
"band": "A",
"categorySubtotals": {
"injection": 0,
"exfiltration": 0,
"permissions": 0,
"supply-chain": 0,
"network": 0,
"hygiene": 0
},
"vector": [
{
"kind": "client",
"term": "capability-exposure",
"level": "minimal",
"label": "capability blast radius (minimal) — client exposure if the model is manipulated",
"appliedPenalty": 0
},
{
"kind": "client",
"term": "verification-discount",
"level": "repo",
"label": "publisher verification (public source) — no provenance, but the source is public and inspectable",
"appliedPenalty": 1
},
{
"kind": "client",
"term": "coverage-honesty",
"level": "source",
"label": "inspection depth (source) — how much of the target the scan could see",
"appliedPenalty": 0
}
],
"gatesFired": [],
"methodologyVersion": "mcptrustchecker-1.13"
},
"capability": {
"level": "minimal",
"reasons": [],
"tags": []
},
"coverage": {
"level": "source",
"inputs": {
"toolSurface": true,
"implementationSource": true,
"packageMetadata": true,
"liveTransport": false
},
"caveats": [
"Tools were statically extracted from the published source (37 recovered), not enumerated from a running server. Tool-poisoning, Unicode-smuggling, capability and toxic-flow analysis ran on this inferred surface, but a mis-parsed registration could be missed or mis-attributed, so tool-derived findings are capped below “confirmed”. To grade the real runtime surface, scan the running server: --command \"npx -y <package>\"."
]
},
"findings": [],
"toxicFlows": [],
"capabilities": [
{
"tool": "analyze_gc_content",
"tags": [],
"reasons": {}
},
{
"tool": "find_restriction_sites",
"tags": [],
"reasons": {}
},
{
"tool": "predict_orfs",
"tags": [],
"reasons": {}
},
{
"tool": "assemble_fragments",
"tags": [],
"reasons": {}
},
{
"tool": "log_analysis_parameters",
"tags": [],
"reasons": {}
},
{
"tool": "generate_resource_map",
"tags": [],
"reasons": {}
},
{
"tool": "multiple_sequence_alignment",
"tags": [],
"reasons": {}
},
{
"tool": "highlight_conserved_regions",
"tags": [],
"reasons": {}
},
{
"tool": "generate_sequence_logo",
"tags": [],
"reasons": {}
},
{
"tool": "export_alignment",
"tags": [],
"reasons": {}
},
{
"tool": "get_nucleotide_sequence",
"tags": [],
"reasons": {}
},
{
"tool": "compare_annotations",
"tags": [],
"reasons": {}
},
{
"tool": "find_intron_exons",
"tags": [],
"reasons": {}
},
{
"tool": "align_promoters",
"tags": [],
"reasons": {}
},
{
"tool": "build_phylogenetic_tree",
"tags": [],
"reasons": {}
},
{
"tool": "compare_phylogenetic_trees",
"tags": [],
"reasons": {}
},
{
"tool": "get_cross_references",
"tags": [],
"reasons": {}
},
{
"tool": "analyze_ptms",
"tags": [],
"reasons": {}
},
{
"tool": "get_pathway_data",
"tags": [],
"reasons": {}
},
{
"tool": "predict_protein_properties",
"tags": [],
"reasons": {}
},
{
"tool": "predict_transmembrane_regions",
"tags": [],
"reasons": {}
},
{
"tool": "scan_protein_motifs",
"tags": [],
"reasons": {}
},
{
"tool": "search_pubmed",
"tags": [],
"reasons": {}
},
{
"tool": "get_publication_details",
"tags": [],
"reasons": {}
},
{
"tool": "get_publication_abstract",
"tags": [],
"reasons": {}
},
{
"tool": "blast_search",
"tags": [],
"reasons": {}
},
{
"tool": "psi_blast_search",
"tags": [],
"reasons": {}
},
{
"tool": "align_sequences_global",
"tags": [],
"reasons": {}
},
{
"tool": "align_sequences_local",
"tags": [],
"reasons": {}
},
{
"tool": "generate_dotplot",
"tags": [],
"reasons": {}
},
{
"tool": "get_protein_structure",
"tags": [],
"reasons": {}
},
{
"tool": "analyze_secondary_structure",
"tags": [],
"reasons": {}
},
{
"tool": "predict_rna_secondary_structure",
"tags": [],
"reasons": {}
},
{
"tool": "scan_rna_motifs",
"tags": [],
"reasons": {}
},
{
"tool": "search_uniprot",
"tags": [],
"reasons": {}
},
{
"tool": "get_protein_entry",
"tags": [],
"reasons": {}
},
{
"tool": "get_protein_sequence",
"tags": [],
"reasons": {}
}
],
"surfaceDigest": "d4bf549a830f9a37ac0ca0d4f0f39bc7c5c6eebdcb5e15cbbf781f5ef888ff52",
"stats": {
"tools": 37,
"prompts": 0,
"resources": 0,
"findingsBySeverity": {
"critical": 0,
"high": 0,
"medium": 0,
"low": 0,
"info": 0
}
}
}